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View Structure Prediction Details

Protein: CE23976
Organism: Caenorhabditis elegans
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23976.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
192.0 [0..2] [444..1928]

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Predicted Domain #1
Region A:
Residues: [1-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIKPSVSK GESQAPQTRQ LEASKPTVQG IIDILHDTIS YVQVEKQSKT INFSIPHLQM  60
   61 IKEQLESIQL KDKNYKDLEK KFNEKQDEHL ETIQKLDSTL SRQKLKYDDM RQALSVKIYT 120
  121 LENECSNLQD NYADLQNDFE VQIEKFKKLQ NLKSIQNHEN SKNVNPLTLD ELTEQLKQFK 180
  181 EELSIDQKLK NIQLTCEGLQ SAVGNFEMNS KKAKEIEILK MDIKKTQELY ESRLLRAAQE 240
  241 NKKLLRKNDT LKNYLDNQTA KIGELTAGNK TENRSPTPTL QGLIEILQKF SDDQKLEPEC 300
  301 KMLQLHKEEC RLILESLEVH DKKDQEIQWF QRQINDQKKR IANLGWSYEN ALEDKDALEL 360
  361 KLEHQYEQMM ELKKNFIPKN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [381-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EISEDLAKTV RNFGKRLRNS RGNLKNAFKE LEALKEVQEE EGSSDESSES SASDDLPDGD  60
   61 SSSEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle