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View Structure Prediction Details

Protein: CE23965
Organism: Caenorhabditis elegans
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23965.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
232.0 [0..2] [384..655]

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Predicted Domain #1
Region A:
Residues: [1-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAYAAALFF WGWLGDRLNP KLVVAAGMVG SAVTLTLFGA IPKWFNFYHA PYYIMTYVAF  60
   61 GLVQACGWPS EIAIMANWFG KGNRGFVMGV WAACQPVGNI FGSIFTAMVL PLGYQYTFVF 120
  121 NSVLIALGAI VVVMAIDSSP NEEHEDGVEA NSSEPHHNFH GEPISLFKAV LLPGVLAYCI 180
  181 CNACLKLVNY AFFFWLPLYL TDAYHWEESQ ADQLSIWYDF GGIIGSVLGG YITDKMGKRS 240
  241 PLIVAMLVCS IGSLYFYAHV GPHMFWNAVV MTTVGVTVSG PYNLIVGSIS IDLGSQPALA 300
  301 GNTQAMSTVS GLLDGTGSAG SAVGQLLIPI IQDDLGWKAV FYVFMLLNGF AILAILKRCI 360
  361 IDLKSLRKLR SGEESPLLND EAGDHED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle