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View Structure Prediction Details

Protein: vab-8
Organism: Caenorhabditis elegans
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vab-8.

Description E-value Query
Range
Subject
Range
vab-8 - kinesin-like protein status:Confirmed UniProt:Q21441 protein_id:CAD36504.1
936.0 [0..30] [582..514]

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Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTSALFEI RRSQITFMEY FKYTWQRLMY NLDDGKMKQI MQWMETSEAP PILFSSPCYE  60
   61 NSATSVEELR ECVGILSHPL EDIIEQEEES MRTSTATTGG SKKDHPLRIL SKQDLNVEPE 120
  121 IKDKQEENEL ELVMAASLSS MRSHDILAKL EAMRNAQNGN SVQNIGNSQS NTDMDVSEMD 180
  181 VYRRASHLEE YAMQRVREIE ENKLKNKKKI KLGLNCCQQQ SMISSGSTVV DWSQIERKKE 240
  241 KEREVHEEEM RKEMLRERRA KLKITELEIK RERNLIDKEL DDKKGIANSI ARQLQHFSLS 300
  301 P

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.16
Match: 1jadA
Description: C-terminal domain of PLC-beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [302-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRGGRTHRSV STHRIDPPNA SLPSTPTMSH KKVIGGSLAK LSASGASGST GAPPSPALGY  60
   61 HQSLPRHSKL PTSVNGRRAS AERERKSNKA SRNSCSKERK ISGSKEELQW RSPYAQMTSP 120
  121 KSYGGPGTSS SGRGSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [438-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APGSDFETPV VSTTEKSANG TIPRSKRQSY SASSGYESAN DYHIYSTTNK KPHILDKKRN  60
   61 EEKLSLVRQA DEIRHRQWQL KKELEEAKRA IGQEDDAKMI ANSSDQRLNG LSRTTMIDAM 120
  121 LQENRILEKR LVACRNHSML VTTFI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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