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View Structure Prediction Details

Protein: dmd-4
Organism: Caenorhabditis elegans
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dmd-4.

Description E-value Query
Range
Subject
Range
gi|157771954 - gi|157771954|ref|XP_001677797.1| Hypothetical protein CBG07603 [Caenorhabditis briggsae AF16]
gi|187033290, gi... - gi|39596621|emb|CAE63240.1| Hypothetical protein CBG07603 [Caenorhabditis briggsae], gi|187033290|em...
198.0 [0..1] [260..1]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIGNLHVFP NGRIERERKP KCARCRNHGL VSWLKGHKRH CKYKECACEK CNLIAERQRV  60
   61 MAAQVALKRR QATEDAIALG LRVVAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 1lpvA
Description: DM domain of Doublesex (dsx)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [87-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAIDRLPQGP VWNTAGGEDE DMDYLDEEIE EKPPTPVSEE LVPLKRKKVE ETYELSSFSP  60
   61 IELLMTLFCE HEKHVLELVL EACHGNVLQA IEHFANVRRV KNINQMKLFA AATRMDHVFP 120
  121 NMTNFILPKQ SFLIDSLLEQ PTFPVSSQAS TSTKTCDSSS VDSISPNSST FESS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.23
Match: 2dhyA
Description: No description for 2dhyA was found.

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