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View Structure Prediction Details

Protein: CE23076
Organism: Caenorhabditis elegans
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE23076.

Description E-value Query
Range
Subject
Range
gi|39585962, gi|... - gi|39585962|emb|CAE68251.1| Hypothetical protein CBG13928 [Caenorhabditis briggsae], gi|187028255|em...
gi|157759119 - gi|157759119|ref|XP_001671903.1| Hypothetical protein CBG13928 [Caenorhabditis briggsae AF16]
294.0 [0..1] [357..1]

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Predicted Domain #1
Region A:
Residues: [1-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALAISHCV SHVARPVSPV TQGKPSGSRQ QPAIRFALIL RKSTRWQWEK EQTGLSDADL  60
   61 KKHLSSKGTK VQELLENEKK QVNAVQEIVS ELGKAGISTK VVTREQLAQY LPEADLVISA 120
  121 GGDGTFLAAA SVVNDNTPII GINTDPIGSE GHLCVGGKNP PRDLIERLVS GNLKWVQRTR 180
  181 IRVTVKESRN SIFSLKRSEK STNLALNEVF IGEDEAAKVS TYNISIDDSQ TVKQKSSGLI 240
  241 VSTGTGSTSW YLGMNRIDEN ATTSVLEALQ SLGVDVPITR NLVEKVVNSV NEKIPFEPDH 300
  301 PSFAFSIREP IFNATYKRTA TRGFARKIKL ESRCTNGYLV LDGSTKIPFP RGAVATIEVN 360
  361 PNDALKTVIV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.045757
Match: 2an1A
Description: Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle