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View Structure Prediction Details

Protein: fat-1
Organism: Caenorhabditis elegans
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fat-1.

Description E-value Query
Range
Subject
Range
gi|110084514 - gi|110084514|gb|ABG49414.1| chloroplast omega-3 fatty acid desaturase [Jatropha curcas]
265.0 [0..4] [402..59]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAHSSEGLS ATAPVTGGDV LVDARASLEE KEAPRDVNAN TKQATTEEPR IQLPTVDAFR  60
   61 RAIPAHCFER DLVKSIRYLV QDFAALTILY FALPAFEYFG LFGYLVWNIF MGVFGFALFV 120
  121 VGHDCLHGSF SDNQNLNDFI GHIAFSPLFS PYFPWQKSHK LHHAFTNHID KDHGHVW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQDKDWEAMP SWKRWFNPIP FSGWLKWFPV YTLFGFCDGS HFWPYSSLFV RNSERVQCVI  60
   61 SGICCCVCAY IALTIAGSYS NWFWYYWVPL SFFGLMLVIV TYLQHVDDVA EVYEADEWSF 120
  121 VRGQTQTIDR YYGLGLDTTM HHITDGHVAH HFFNKIPHYH LIEATEGVKK VLEPLSDTQY 180
  181 GYKSQVNYDF FARFLWFNYK LDYLVHKTAG IMQFRTTLEE KAKAK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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