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View Structure Prediction Details

Protein: madf-1
Organism: Caenorhabditis elegans
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for madf-1.

Description E-value Query
Range
Subject
Range
gi|187028207, gi... - gi|39586010|emb|CAE68301.1| Hypothetical protein CBG13992 [Caenorhabditis briggsae], gi|187028207|em...
gi|157759023 - gi|157759023|ref|XP_001671855.1| Hypothetical protein CBG13992 [Caenorhabditis briggsae AF16]
287.0 [0..42] [255..3]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASPLQITE KSPEMSQTPP KDENNELEFG IPTKRSRSGR PKKICAFSSF KCYEERDIEF  60
   61 FIHQVSDNQI IWDRRNSLNF DGNLVHATFD KIEICCQFLA RKNGENASRL WTELASEYKR 120
  121 EKARIEQLPS GIYSEEFEIR FPFMQQMWFL EIEASELKEA DSNSLEETIV NFARQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [176-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSINDAPSPS SSLSAPIEHL NSSINRLIAV IDKKSEDTTK RQIPAKYSDI VEHLIGFLDK  60
   61 TPRERQMEVK CKIYNFLDTI N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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