YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE22466
Organism: Caenorhabditis elegans
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22466.

Description E-value Query
Range
Subject
Range
SEC11C - SEC11 homolog C (S. cerevisiae)
SC11C_PONAB - Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3
SC11C_PONPY, SPC... - Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-) (SPase 21 kDa subunit) (SPC21) (SEC11-like 3...
190.0 [0..7] [183..16]

Back

Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLPDVAMF SEIRQMNIRQ LFYQCLNFAM VVSSALMIWK GMMVITGSDS PVVVVLSGSM  60
   61 EPAFYRGDLL LLTNDLEDPV RVGDITVFKV EGREIPIVHR VIKVHEKSAD NTKILTKGDN 120
  121 NQVDDRGLYA PGQLWLSRTD VVGRTKGLLP YVGMVTIIMN DYPKLKYAVL AFLGLFVLLH 180
  181 KEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.30103
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle