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View Structure Prediction Details

Protein: CE22235
Organism: Caenorhabditis elegans
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE22235.

Description E-value Query
Range
Subject
Range
gi|114647758 - gi|114647758|ref|XP_509475.2| PREDICTED: scavenger receptor class B, member 1 [Pan troglodytes]
489.0 [0..3] [481..156]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKAPCLFG SAIILGLLLA AAGVLLLIGI PIDRIVNRQV IDQDFLGYTR DENGTEVPNA  60
   61 MTKSWLKPLY AMQLNIWMFN VTNVDGILKR HEKPNLHEIG PFVFDEVQEK VYHRFADNDT 120
  121 RVFYKNQKLY HFNKNASCPT CHLDMKVTIP NIVFQKLIDA AD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTIFGVRIKF AIESVLKMVS EAPYITVKVS DALFDGYEDP IIDIVCKNKI LQFLCETNSL  60
   61 QRRVGFFYGQ NGTTDGIYEV DAGVPSPSKI GHLYTWNNMT EMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [266-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGTWDTKYAR MINGTDGQLF SPMLKREDRL TIFVPQICRS IQMEYTKDVA VNGVPSWRYA  60
   61 PPLDLYDPAL PQNRAFCNKN GMPRYFDNTT VQIENCLPAG LIDLSRCQAG NPRVYLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [383-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPHFYNSPME LWHSVTGLSV PTASNDLTVV DIEPTAGVPT QAKRIMQINV GMVKGSLSVT  60
   61 ENTTNVVVPV LWMNETAYFD QGTRDQLINI FNAKHYSFIG GVISLSLGLI AWLAVFVVII 120
  121 VYSRQSDEEE YGRLVLEDED EEPAQDENAV LA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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