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View Structure Prediction Details

Protein: CE21176
Organism: Caenorhabditis elegans
Length: 446 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21176.

Description E-value Query
Range
Subject
Range
h0012206 - null
gi|104487297 - gi|104487297|ref|NP_570924.2| protein tyrosine phosphatase, receptor type, sigma isoform 2 precursor...
306.0 [0..1] [415..1335]

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Predicted Domain #1
Region A:
Residues: [1-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLWFSGES DNYKLEDEEK ASATYSSLRT GILSLTPGDQ KCRLYCSGPR CRFCIVVTGQ  60
   61 TEIQAIDGLY STWITSDILA MARLQVEHFD SLGIVEKFKT NGIQSVINLQ ESGEHSFCGS 120
  121 GNLTSGFSYD PENLMRNGIY HYNFPLPDFQ ACTPNRLLDI VKVVDFALSH GKIAVHCHAG 180
  181 HGRTGMVIAA WMMYALGMSP SQAVDTVRSR RAKAVQSKEQ VKTLHEFRLL IRNNGGMIIP 240
  241 KNKMTHISEY VAYNQKFISK PESRLYGKIP KIVYIAMRIT LQKMYSSVNF EVENDYRMKI 300
  301 KCEGPLPENK SFDEQLLNAQ LNDDDHEKTH FWYMDQVKNG LSISTISRQL ENEDFRDIIR 360
  361 LLDLFFHSTF HQLTHKEEIF AVLQNWDQTE KDWSPTFWFL LKCIREMPIP LHLALSRLIS 420
  421 KWFLRSEVEI ASRIKHILSS PVTSNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle