YRC Public Data Repository - Protein Structure Prediction

Protein:	CE21168
Organism:	Caenorhabditis elegans
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21168.

Description	E-value	Query Range	Subject Range
CE24533 - status:Confirmed UniProt:Q9U1Z4 protein_id:CAB60397.1	185.0	[0..1]	[164..1]
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	184.0	[0..2]	[164..15]
TMED9 - transmembrane emp24 protein transport domain containing 9	183.0	[0..1]	[164..22]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	180.0	[0..4]	[164..17]
gi\|54261696, gi\|... - gi\|89268685\|emb\|CAJ82691.1\| transmembrane emp24 protein tra [Xenopus tropicalis], gi\|58331996\|ref\|NP...	179.0	[0..3]	[164..6]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	179.0	[0..3]	[164..16]
gi\|39579851, gi\|... - gi\|39579851\|emb\|CAE56730.1\| Hypothetical protein CBG24517 [Caenorhabditis briggsae], gi\|187040077\|em...	179.0	[0..1]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLIALLSL ATYADSLYFH IAETEKKCFI EEIPDETMVT GNYKVQLYDP NTKGYGDYPN  60
   61 IGMHVEVKDP EDKVILSKLY TSEGRFTFTS NTPGEHVICI YSNTTAWFNG AQLRVHLDIQ 120
  121 AGDHAQDYAQ VEEERKLDEN REKSLENEDF RLKIDENRGK CSEKLIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.585027
Match:	PF01105.15
Description:	No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits