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View Structure Prediction Details

Protein: lpd-7
Organism: Caenorhabditis elegans
Length: 531 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lpd-7.

Description E-value Query
Range
Subject
Range
PESC_RAT - Pescadillo homolog OS=Rattus norvegicus GN=Pes1 PE=2 SV=1
754.0 [0..1] [531..1]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDRFKQKYT AGAAVAYMSR KQALKKLQLT LKDFRRLCII KGIYPHEPAH KKQANKGSTA  60
   61 NKVFYYRKDI NFLAHEPIIN KFRDYKVFLR KLNHLKAKKE EDKLKKLYEN KPVYSLDTIV 120
  121 KERFPTFGSA LRDMDDALSL CFTFAMLPHT RVLKEGMIDS CRKLTAEFMH YVIESQSLRN 180
  181 TFISIKGIYY QAEVHGEKIT WVVPH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [206-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERGLPHVTDV DFTVLVTFVE FYIAMLGFVN FKLYQDIGLF YPPQIGQVVK TDEMETEEYK  60
   61 EKVYSLAKPL AKRKDVEQAE DDEPLDLLGE DSDALAQKVR E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [307-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKSIKTMFKG CVFYLNRECP KEALTFIIRN GGGIVGWEGG PTDLKADSKN ISHHVVDRPM  60
   61 DKLEVNRLYV QPQWVFDCLN ARRKLPTERY MPGVALPPHF SPFTSEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 2ep8A
Description: No description for 2ep8A was found.

Predicted Domain #4
Region A:
Residues: [414-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGDYIPFERL EELRSMGKDV SDLEAAIPKT MDELPMRRKE VKPEKPKGIH IAVGQMHKKS  60
   61 KEKFHETVEK GQELKMRELM ISKKHQRVYH SMKTTFKRNR NDALKLKKKA KLAKATEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle