YRC Public Data Repository - Protein Structure Prediction

Protein:	hus-1
Organism:	Caenorhabditis elegans
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hus-1.

Description	E-value	Query Range	Subject Range
gi\|114613293 - gi\|114613293\|ref\|XP_519090.2\| PREDICTED: HUS1 checkpoint protein isoform 2 [Pan troglodytes] HUS1 - HUS1 checkpoint homolog (S. pombe) gi\|208966516, gi... - gi\|61356098\|gb\|AAX41208.1\| HUS1 checkpoint-like [synthetic construct], gi\|61356089\|gb\|AAX41207.1\| HU...	370.0	[0..1]	[276..1]
gi\|54695830, gi\|... - gi\|61365947\|gb\|AAX42789.1\| HUS1 checkpoint-like [synthetic construct], gi\|54695830\|gb\|AAV38287.1\| HU...	369.0	[0..1]	[276..1]
gi\|109066667 - gi\|109066667\|ref\|XP_001088000.1\| PREDICTED: similar to HUS1 checkpoint protein [Macaca mulatta]	369.0	[0..1]	[276..1]
gi\|149016928, gi... - gi\|157819027\|ref\|NP_001102562.1\| HUS1 checkpoint homolog [Rattus norvegicus], gi\|149016930\|gb\|EDL760...	364.0	[0..1]	[276..1]
gi\|119891181, gi... - gi\|76615586\|ref\|XP_591945.2\| PREDICTED: similar to HUS1 checkpoint protein isoform 1 [Bos taurus], g...	354.0	[0..1]	[276..1]
HUS1_MOUSE - Checkpoint protein HUS1 OS=Mus musculus GN=Hus1 PE=2 SV=1	351.0	[0..1]	[276..1]
gi\|30060007, gi\|... - gi\|30060007\|gb\|AAP13340.1\| PCNA-like DNA checkpoint protein Hus1 [Xenopus laevis], gi\|22038051\|gb\|AA...	350.0	[0..1]	[276..1]
gi\|55742140 - ref\|NP_001006827.1\| HUS1 checkpoint homolog [Xenopus tropicalis] gi\|55742140, gi\|... - gi\|55742140\|ref\|NP_001006827.1\| HUS1 checkpoint homolog [Xenopus (Silurana) tropicalis], gi\|49904210...	346.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSSLLQDT AAIDVFIKIL TSVSKLSKKR CCVKIEKNAL NFICCSGLHD GGSWFSLSIP  60
   61 YSSQIFRKFD MVGMNPRNEE QNLIYFELEI DSLVRVLPGG HCYLKLKLSK SQKDEPMLSV 120
  121 EVRNPEADIV SHQIPITIIL SKYWNSYSRP SIGHRKMSIS MPPPKMMSRF LHVFKNMNTR 180
  181 VVKLTASTSG DLRISTKIET GEIDVSFSDL QTNPSETDSQ EDTAKVQLMI RNISPLFQSF 240
  241 ANTRTRAKMN IISNRMAEFN FHNEDCVLSY IVGNVSD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.14
Match:	1iz5A
Description:	Prolifirating cell nuclear antigen (PCNA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits