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View Structure Prediction Details

Protein: CE20758
Organism: Caenorhabditis elegans
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20758.

Description E-value Query
Range
Subject
Range
gi|109470919 - gi|109470919|ref|XP_001053614.1| PREDICTED: similar to Ribosome-binding protein 1 (Ribosome receptor...
189.0 [0..68] [405..160]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCTSEAAVD MDSGRGDIRR LKDGEILKYT SGIFSSKWKK MYAVLFSDSR LVWFENRGDR  60
   61 KPKGSVLLKD VIPYICVGLM TDRMPVKRPN VPEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.39794
Match: 2dhiA
Description: No description for 2dhiA was found.

Predicted Domain #2
Region A:
Residues: [95-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSVHHLVGIG MNPKADPCHW ILFSSDSDIE SWFTEITKTL PKPANPPPNA PQQGPGAQPP  60
   61 QQQNNGGYVP PTVYPSAPPP VQPGYNPRPA SGQSYPSGPQ VPPAYGQYPQ PGYPQPAGVP 120
  121 TSSHTTVIVR DGGYGGGGYG GYGGGGGGFG STGLGFGSGI LAGSLLGYGL GSMWGGHHSY 180
  181 GGWGGGYGGG GYGMAGGYYS DNDTTVTNNY YNYGDNDNNG GNNHSSSSNA ITDAPGNAGD 240
  241 QSQQQSDNNY GNANQDSYDQ GNDYGNDYGN AGYDSGDFGG GDYGGGGYDS GDFGGGDFGG 300
  301 GDFGGGDFGG GDY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle