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View Structure Prediction Details

Protein: CE20477
Organism: Caenorhabditis elegans
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20477.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
296.0 [0..32] [476..577]

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Predicted Domain #1
Region A:
Residues: [1-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVGDAEEK IEKSDEMSEN SRKTSKILCC NLTRYLILIL TLTCLTLLQM NSLAFNFTVI  60
   61 CMSDVSDDYH ITHPNETHWF EDSNMKSLVF SSMAVGGLLG LLIAMPLMHR VGVRLVLSIC 120
  121 GVFSILGTIL FPLAVEWNFF SVLVVRFLQG LGISMVFTVL GSVPTAWAPN NESGTFLAVL 180
  181 SCAFQWSNVI CMPISGFLCE SSWGWRSIYY LFGIVTIVFF LAFYFFYTDS PTDHRNVSNK 240
  241 ELSLILQDKT VTHKEPVPYL AICKDPCVLV TWMSNIGGNL GFLTLVLYGP TYLREVLNFE 300
  301 VRGTGFASAL PFLLSAAVKS IAGQLSDRCD FVSERVRFTI CGIVARLGLA IGYIGMATTS 360
  361 SRLVAQIAFT FSIAVSGLNI MGTVKCLQLR CKQHVHFAVS VIALMAYVIQ FGAPILVGII 420
  421 CPDNTAEQWG WFFLIVGIIV FVTSAPFPWF TTAEPADYTL SREKQLEIAK HKELQECC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
substrate-specific transmembrane transporter activity 5.46247398538901 bayes_pls_golite062009
ion transmembrane transporter activity 4.58978526526921 bayes_pls_golite062009
cation transmembrane transporter activity 4.31967711223954 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
anion transmembrane transporter activity 3.94605227012838 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 2.52916479889426 bayes_pls_golite062009
phosphate transmembrane transporter activity 1.78662033436109 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
polyol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.812001619402678 bayes_pls_golite062009
binding 0.805286077372817 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
cation:sugar symporter activity 0.143419068761182 bayes_pls_golite062009
sugar:hydrogen symporter activity 0.143419068761182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle