YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pgl-2
Organism: Caenorhabditis elegans
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-2.

Description E-value Query
Range
Subject
Range
pgl-1 - status:Partially_confirmed UniProt:Q304E5 protein_id:ABB51171.1
663.0 [0..1] [414..42]

Back

Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPCKREIVD FDGIRTHFFP NLALYTCYNE ELIAHHSENA NRFTSYVFGA VEDSPTEQEI  60
   61 LEILFPENAN PEAISTGMDA CLALGENFLS HYKSFNARLN RQNHSHDLLD AVQEFDEKKI 120
  121 LAISRKSRLR KSADSKILTI LVNILLSENQ EEKFMEICEL CSLDLDFDAF VLIKILQLEN 180
  181 EENAEEVQII RENVVDQILE QKPFLAHLLK NGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKIDEITKLL SVPIIGSSSN QINQLITKIC DSSEISDTAV EEHYHQNFKL MNILVRTMIV  60
   61 DRFDLTIDAL EQIPVEIKNR MFPGIRIRVL QDTLHFLHQL FKVFLNESQK FDNLAPQSFA 120
  121 KAIKNVWVRH AIIGILDSLK FSLNKDVFNQ LVPLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [369-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGSQVSNDVI SGKVENAISC AIWIVKTFGT EGSRDSIEKL PWFDSSVELT ELINSIEIAV  60
   61 TSVEVEDQTV NFRKIPQKDW LDGNLQKALK TEPTSEKFGI SNSLKIKDEN QRNQIRGFKD 120
  121 NSKEPNAKVS ARFGSKFQRV DSSTKRRLFG GVGVGEPRNC RGFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle