YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tfg-1
Organism: Caenorhabditis elegans
Length: 486 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tfg-1.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
362.0 [0..95] [486..1401]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHSNGAITS TILKARHADV VRKTSLHHAN DLTLIDLVLN VQRLLALPSD ANFVLKYKDE  60
   61 EGDLVTLAED SDLLLALHTS GATLDVTVVV DSR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.38
Match: 1wj6A
Description: Solution structure of RSGI RUH-024, a PB1 domain in human cDNA, KIAA0049
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [94-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AREAVHDVQK QVEQIKLDVG KLLGALSALD VAQIAEQSNT SVANLSAPKQ SHHDNIVFQK  60
   61 SFEAAPPSPV PSEKAELPAT IQPSVHEQFN HRPAHVEEEI PLENHYAPPP HQQIPDDLNT 120
  121 SFSSQPPPPI EQFGAIPPPN ATIPSFPTSN AASPPVQEFA PPPPQQQQQQ FQAPPPPMAS 180
  181 HSSISSTPVQ QQGFAPPQQF GGPPPSGPPS EYGGYAPPQQ QQQQFGAPPP QGAPQQGFGA 240
  241 PPQGPPQGGP PQGSFGAPPP QQFHAPSPQS FGGPPPPVSS APGNFAPPPQ SGPPGAFAPP 300
  301 PSAFGAPQGP GGPGGYGPPP PGGPGAPGSY GPPQGGPGGF GPPPPGGPGA YGPPPTGFPP 360
  361 VGAPPPGAAG APGGNPFARG PSATGYRQSP YQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.045757
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle