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View Structure Prediction Details

Protein: CE20308
Organism: Caenorhabditis elegans
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20308.

Description E-value Query
Range
Subject
Range
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1
260.0 [0..5] [196..27]
gi|157769389 - gi|157769389|ref|XP_001676515.1| Hypothetical protein CBG14364 [Caenorhabditis briggsae AF16]
gi|39597845, gi|... - gi|39597845|emb|CAE68537.1| Hypothetical protein CBG14364 [Caenorhabditis briggsae], gi|187027850|em...
251.0 [0..22] [196..167]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSIAILAS LLLAISAEPT ILQSPRVTNW GEWTGKRCPS GQFVRGLRVK YDNAQYFSDQ  60
   61 TGINAIELVC HNRSDQVDTY LKSGEGPHGD WLELQYCPEG EYGVGFAIRS AGPLRGRFDD 120
  121 YGVVNFQLYC GQPNGKRNSW HRLTGVTFLN YQKGEWSSNQ YCQSGKVVCG INTQIETDQG 180
  181 WFGDDTGLNN ADLWCCDF

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Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle