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View Structure Prediction Details

Protein: CE20284
Organism: Caenorhabditis elegans
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20284.

Description E-value Query
Range
Subject
Range
gi|39591210, gi|... - gi|39591210|emb|CAE73263.1| Hypothetical protein CBG20679 [Caenorhabditis briggsae], gi|187022968|em...
gi|157752504 - gi|157752504|ref|XP_001679964.1| Hypothetical protein CBG20679 [Caenorhabditis briggsae AF16]
291.0 [0..1] [199..1]
CE20285 - status:Confirmed UniProt:Q9XWJ5 protein_id:CAA21668.1
267.0 [0..4] [199..26]
NDUB8_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 P...
235.0 [0..17] [194..16]
gi|187469737, gi... - gi|62642368|ref|XP_215269.3| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...
234.0 [0..3] [194..17]
gi|124000217, gi... - gi|124000217|gb|ABM87617.1| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [synthetic c...
NDUFB8 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
232.0 [0..18] [194..17]
NDUB8_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Mus musculus GN=Ndufb8...
232.0 [0..3] [194..17]
NDUB8_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pan troglodytes GN=NDU...
232.0 [0..18] [194..17]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAPRLIKAI NASRSLHLAR IMSMRGPLTF DGWYPRDHKP SAPPTNEEER RAAAVKYGLR  60
   61 PEDYQSMDKD DVIKFAGDYP DLGVITYDHK DPYEAWTDRQ NRRNWGELVP IDMMRYRGDR 120
  121 LTFTGLEAED YTTWNSIVMC LRVLVPMALL AWYFTNEHPN ALRWKNPAMP KQYSYDFYRA 180
  181 YPFDDPRKYP IVNYSFDLE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 138.468521
Match: PF05821.2
Description: No description for PF05821.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle