YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: klp-7
Organism: Caenorhabditis elegans
Length: 747 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klp-7.

Description E-value Query
Range
Subject
Range
gi|22022305 - gi|22022305|dbj|BAC06512.1| kinesin [Caenorhabditis elegans]
588.0 [0..1] [747..1]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSCRSCKEN PEVQRKRAEK PWRRAPKAKS EVEKHGIGPP DSDSGEEISF PWYNVTGKML  60
   61 VVGMHVEIKR SDGRIHGAVI AEVKSNGRFM VEWYEKGETK GKE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 2gf7A
Description: No description for 2gf7A was found.

Predicted Domain #2
Region A:
Residues: [104-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLEELLTLN PSLQAPKPTP PPQPPQKTLQ ASTAVNRQNG IHAQSMILDD EDTFLLDHIN  60
   61 MIPAKGASAN KRPTGAFTQH VPVRMAPPSE KPLPTRRAPS PKEDAAPAPK STRTTAAFKP 120
  121 DLDSTAITVP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [234-651]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHTARRTVVV APAPAPVPAP PIANMTSQRA PSPVARVPSP KNVPRSYPQQ DVQPSNGNFA  60
   61 FAEMIRNYRA QIDYRPLSMF DGVNENRISV CVRKRPLNKK ELTKAEVDVI TIPSRDITIL 120
  121 HQPQTRVDLT KYLDNQKFRF DYSFDEYANN ELVYRFTAAP LVKTVFDNGT ATCFAYGQTG 180
  181 SGKTHTMGGD FSGKKQNASM GIYALTARDV FRMLEQPQYR RKDLSVHCAF FEIYGTKTYD 240
  241 LLNDKAELRV LEDKMQKVQV VGLKEEQAHN EQDVLELINK GTLVRTAGTT SANANSSRSH 300
  301 AIFQIILRQG KKVWGKFSLI DLAGNERGQD TRECDRDTRK EGANINTSLL ALKECIRGMA 360
  361 RNSSHVPFRQ SKLTMVLRDS FIGEKSRTVM ISMISPGISS SDHTLNTLRY ADRVKEMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2gryA
Description: No description for 2gryA was found.

Predicted Domain #4
Region A:
Residues: [652-747]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGSGEATPI RDEELFLPPS ADKSDEEYDE MVEKQEHRRV AVDHVRNLKD MSEKIIRETT  60
   61 IVLSNEPSAA QKAECLAKLD QLAQIVSNTR VAVENV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle