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View Structure Prediction Details

Protein: nkb-2
Organism: Caenorhabditis elegans
Length: 374 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nkb-2.

Description E-value Query
Range
Subject
Range
gi|39581861, gi|... - gi|39581861|emb|CAE60754.1| Hypothetical protein CBG04440 [Caenorhabditis briggsae], gi|187035802|em...
gi|157758343 - gi|157758343|ref|XP_001671515.1| Hypothetical protein CBG04440 [Caenorhabditis briggsae AF16]
380.0 [0..1] [371..1]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSNSSRDD SQQRKSFLDK QNSSKTAKSR VGSSEKSKSS KTEKSTQQSE KKTERSTANT  60
   61 TIKSEAPSKK LITQQSTASI QSVGRRGPKM SDGTEFDAGP YGYIFSFIFL FVLWGLATML 120
  121 AIALVWFNFS R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDRQYPIYFG DGSFLGGAPK VSFDPNPRQF LEDGTKNAMS WNIYEFSTYV NYLIRYKQVL  60
   61 KKYSGGIGKQ KVKKEEMC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [210-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNQTMTRENA CKFDRLTDFG ECTLSLDNLE RGFGYSKGQP CIMLKLNKIV GWVPNLSPSK  60
   61 NKTKCPSGDL CCGQGIKFKC TSNADVKFEY FPKTGIPTCY FPYANQGGYE QPYQMVKLTN 120
  121 ITVNRETTIE CAPEDSSLNT LASGKTNEAR FHILMTKNRP VETVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle