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View Structure Prediction Details

Protein: CE19723
Organism: Caenorhabditis elegans
Length: 671 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19723.

Description E-value Query
Range
Subject
Range
CE34176 - WBGene00009072 status:Predicted TR:Q7Z1J6 protein_id:CAD92378.1
690.0 [0..9] [512..72]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLDDDLGDG AEEMDMGDDD QIDYPVDELL EFGDSGDVED AASEMRQMLR DASTPALLHV  60
   61 ASACVSRYSN LAFKRSLLSL DESVAESANS IWTYNKNNFS THHFCNKCGK VAQNSKKCKH 120
  121 CGGPVASFVR VGSFTQIVEL VETYMDDILE LREQLKNDRN LEHNLASPFF SSFRETESPN 180
  181 RLRLSLVVSI DGVRISGNKK K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [202-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWPVSYIIFD LPTGLMQKST NIVLGGIVEC SENPTTTLWN ALIPFILSDV ESHTGKVRNT  60
   61 SFTCHIRPCS ADQPAKRAFF GFMAHQSAES CFFCMSPGTL YKFGDRKRRE ERPGYETIVD 120
  121 SEQGVHGFGP IPAKIVPHVL PYNTPIDILH NLGEGIYTFI RKELLLSEFK KIKPRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [378-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPFSNNKGVL KEAFRKVVLH SNFTNVEACR NGTDKTNFFR IVICLVALSF DTLSPEARVV  60
   61 IVGLGMLGNE MYTNSKASCL FEQQMAAGAA WFLSEANVEY LSIKAHEVLF HLPEINELFG 120
  121 NTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [501-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSTFSFESF YQFALCGYSS RTTRSFVQNA STKKKWWCQP HKPPQEDQMI PPGKNFDKKV  60
   61 EEQRNKNNEK VGHGCPRHFQ QATELNEIEL VVFIRVSFVE HLYQFLDQVL EKGANKSEEA 120
  121 GKWMQMELKK ENCGELVRLP GVLFLSRIQH QNLKFWRREP EWSCARTNRG S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle