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View Structure Prediction Details

Protein: frm-4
Organism: Caenorhabditis elegans
Length: 635 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for frm-4.

Description E-value Query
Range
Subject
Range
frm-4 - status:Confirmed UniProt:Q95Q79 protein_id:AAK68201.1
428.0 [0..1] [635..1]

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Predicted Domain #1
Region A:
Residues: [1-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNNTSSSF LGRLTTSTRS SFMSPKDVRC NVHLLHDSDI IGNEFPRTQS AQTILDYVCQ  60
   61 LKHIQEKDFL GLRYQDHHKH RYWLDLTRSI NHVVKNFKTE SMTLHLRFRY YPSDPARLRD 120
  121 PNLRYQLFVQ LQRDLLHGRL YCPTSSAAEL AALILQAQLG DYNEEKHVGN YVSGYKLLLK 180
  181 QTPKLEERIA NNHKELKGKS SESAELEFLE KASQLDTYAF DPYTIKEPHD TLPVYIGASC 240
  241 KGILIYTGQS RTHNIDWSEL VKVDYSGKEI RLTLSENYRG QITAAGTPTG TLNGHGPGSP 300
  301 SIMDKSLTKK PLTLKYTCPS GQFAKHLWIH ILSQQAFFNE TSAQDVKLKF SKPRIPLLSR 360
  361 G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.09691
Match: 2he7A
Description: No description for 2he7A was found.

Predicted Domain #2
Region A:
Residues: [362-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STFRFPSKRV YREIEEEDSK SILFDKSIME TSAVMNETTT SNENEESILN CSTISAPLSS  60
   61 GSGVVRYDLL RQTPRVEQPW 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [442-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKQNSLKVTT VHDNTASSSS SPDNSETQNN NLSKITNLNL SIEREVSTSP STSPVPIVHT  60
   61 QQHSDHNSQN LEKNGNGKLA NGGGSGVDLG KKTVHTNGTT LICTEEKQDS ILSMDESLTS 120
  121 KSLISRIANT CFVFFLILLL IVAIVIVLFE KSEDSAHNDF IESHRALSDL RHLYYEPTRH 180
  181 YVVEQYRKHF GAKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle