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View Structure Prediction Details

Protein: CE19681
Organism: Caenorhabditis elegans
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19681.

Description E-value Query
Range
Subject
Range
gi|157745701 - gi|157745701|ref|XP_001667947.1| Hypothetical protein CBG03773 [Caenorhabditis briggsae AF16]
gi|187036003, gi... - gi|39595172|emb|CAE60209.1| Hypothetical protein CBG03773 [Caenorhabditis briggsae], gi|187036003|em...
219.0 [0..1] [272..1]
SSH3_RAT - Protein phosphatase Slingshot homolog 3 OS=Rattus norvegicus GN=Ssh3 PE=1 SV=1
187.0 [0..6] [272..321]
SSH3_MOUSE - Protein phosphatase Slingshot homolog 3 OS=Mus musculus GN=Ssh3 PE=1 SV=1
185.0 [0..6] [272..321]
gi|73953412 - gi|73953412|ref|XP_866521.1| PREDICTED: similar to Dual specificity protein phosphatase 1 (MAP kinas...
176.0 [0..9] [203..83]
gi|37196732 - gi|37196732|dbj|BAC97814.1| slingshot-3L [Homo sapiens]
176.0 [0..6] [272..324]
gi|60654361 - gi|60654361|gb|AAX29871.1| dual specificity phosphatase 1 [synthetic construct]
176.0 [0..9] [203..172]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNVGVLGQ MSEINDHLYL SGAGVLKPDK IKQRKINMIV NATTEEPSTY MQGVDTMKIR  60
   61 IEDHPYARLN EHFDVVADKI RNVKERGGKT LVHCMAGVSR SASLVMIYLV KHEHMTLRQA 120
  121 YHYVKAARPI IRPNVGFWKQ MVDYEKRLRG TASVKMVQTP ECDMPIPDVY ADDIRRMQIN 180
  181 REISRHSLPS AQSSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.154902
Match: 2esbA
Description: No description for 2esbA was found.

Predicted Domain #2
Region A:
Residues: [196-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKQRAFSAST YRPSVSSASS LATSSLRRAY SPSSLPASSL ALTTSYSLFS PAPTRKPRQS  60
   61 LFSMYSTSPR HNFFSAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle