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View Structure Prediction Details

Protein: mlt-10
Organism: Caenorhabditis elegans
Length: 690 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mlt-10.

Description E-value Query
Range
Subject
Range
gi|187037136, gi... - gi|39597185|emb|CAE59412.1| Hypothetical protein CBG02776 [Caenorhabditis briggsae], gi|187037136|em...
gi|157751532 - gi|157751532|ref|XP_001679478.1| Hypothetical protein CBG02776 [Caenorhabditis briggsae AF16]
487.0 [0..3] [690..2]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLNLILFT ALAAVTYANV QPHDISQNGA VKDGNHLRID LNETSSVELM DKWLSQAFSG  60
   61 LMAAVASKKI AKMPAEHQNI VQQCSKDAKD VREHAKCLVK LLDAEKSGKL GRKQYQKVVK 120
  121 SPETIVLPEN PKMLTKKDLE KAENAGAAEN NENLEWIGSF GTARAKRSYK VVHRDSYALR 180
  181 STDDVDGMTK LAKSLTNTVR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMKNKTERAE PWVEAVGRIK KLGEEAKREK KNREVMKKRL KQMIDNTPAE FVDPRKPVAL  60
   61 KQAEMEDENN EIAKLMRKKE ADEIRVPLKF LRKAVKTALM LGGQNVTDFD QKTLKMVSPR 120
  121 MMSIVPEQED ESLFNLLSPS LFSLHDEGEG IEKLTSLPHL LKKLDNHGQN AWMDFIVEAA 180
  181 GVSDEVTKTE KVFREKKEKE LRGTDGVPLY FTKENATKIL GNEEKSKIEV FEDLDKSYSE 240
  241 EQKKKLNDDG FAFLTEKQME RLYGKESPYK HTKALKKFKR LRDDPEKYIE KDIRALAEAE 300
  301 KFRVARRADI VSSPFILTPL TFASAPLSNT FIVLSPLVLS PITLSPAVLG PIILSPWVFV 360
  361 PLIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [565-690]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRVLSPLIV NPLVFSPIIL SPLVLHPLIL VPGVFNPIIL SPLVLSPLIL SPQVFTPLIL  60
   61 SPFALNPLIL TPMVGSPLIL SPFVLSPIIL SPQALFAVVL SPYALSPLVE SKLIAAEVVL 120
  121 SPSWLS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle