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View Structure Prediction Details

Protein: CE19142
Organism: Caenorhabditis elegans
Length: 710 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE19142.

Description E-value Query
Range
Subject
Range
gi|73960411 - gi|73960411|ref|XP_547421.2| PREDICTED: similar to xenotropic and polytropic retrovirus receptor iso...
706.0 [0..1] [693..1]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGEQLASH LTPEWRKQYI DYERLKNLLY DDMMEVPADD DRREEHISRL DEKFFNECDQ  60
   61 ELTKINLFFS QKIAEGQGKH HELQTELQVF KDVLGSRSDT TGIRRRFGGK DKFHKETTRN 120
  121 EQQLKLAFSE FYLSLVLVQN FQQLNATGFR KILKKHDKLT GNERGLDWRI NKVEKSSFFL 180
  181 NREIETLITN VETSVINDLE AGNRQAGMKR LKVPPLSEKQ KPLTTFSLGL FIGASIILLL 240
  241 AILLTWIASP ARPQEPKWVA V

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.987
Match: 2v0oA
Description: No description for 2v0oA was found.

Predicted Domain #2
Region A:
Residues: [262-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLFRGPLLLF LSIFLCGVNM AGWAAAGVNH VLIFEVDPRN HLSYQTLMQI ASFMIMLWSF  60
   61 AVLAYLYAHM LHIPPFAPPL ALMVVCLILL LNPIAKPDSV FHRNSRFWLL KHCYKCFTSP 120
  121 FHFVTFTDFW LGDQMNSLTT AFLDFQYFVC FYATEVDYSN GWIEVKGINS TTGSVPWGSV 180
  181 ELS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [445-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGKDQCASAA GLRSLMSIIP AMIRFLQCLR RYRDTKRVHP HLVNAGKYST TFFVVACGAL  60
   61 NKYYEATDPN TTSIFFYIWI LSYIMSFTYT FLWDIFMDWG LIDPRAPKEA RFLREEMIYG 120
  121 SKWYYYMAIA QDFVLRLAWV LNVSLGEAWT LDSDFLTTVT APFEVFRRFI WNYFRLENEH 180
  181 VNNCGQFRA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 100.408935
Match: PF03124.5
Description: No description for PF03124.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [634-710]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRDISVKPIR KGDLESLLSK MDQMDGVTHR GQDLMERVKK QKKSAKASRQ LLRKNRFNRM  60
   61 IAAAPVVTTT FIDTTNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle