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View Structure Prediction Details

Protein: abcf-2
Organism: Caenorhabditis elegans
Length: 622 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for abcf-2.

Description E-value Query
Range
Subject
Range
gi|108812648, gi... - gi|108812648|ref|YP_648415.1| ABC transporter ATP-binding protein [Yersinia pestis Nepal516], gi|108...
gi|166207432, gi... - gi|166211661|ref|ZP_02237696.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua...
gi|22126556, gi|... - gi|22126556|ref|NP_669979.1| ABC transporter ATP-binding protein [Yersinia pestis KIM], gi|21959559|...
gi|108806784, gi... - gi|108806784|ref|YP_650700.1| ABC transporter ATP-binding protein [Yersinia pestis Antiqua], gi|1087...
gi|167421800, gi... - gi|167421800|ref|ZP_02313553.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta...
gi|45436066, gi|... - gi|45441206|ref|NP_992745.1| ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus st...
gi|165939634, gi... - gi|165939634|ref|ZP_02228178.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta...
gi|166012112, gi... - gi|166012112|ref|ZP_02233010.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua...
gi|162419791, gi... - gi|162419791|ref|YP_001607368.1| ABC transporter ATP-binding protein [Yersinia pestis Angola], gi|16...
gi|165923540, gi... - gi|165924480|ref|ZP_02220312.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Orienta...
gi|145598768, gi... - gi|145598768|ref|YP_001162844.1| ABC transporter ATP-binding protein [Yersinia pestis Pestoides F], ...
gi|167057191, gi... - gi|167424342|ref|ZP_02316095.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaev...
477.0 [0..81] [600..57]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSDAKKARE AAKKAAAKGG KGKKKVETPT AMSSQHPSVN SLCCLDEELD QAAATLAKIE  60
   61 LENAAARSVA GSLTSDPKGL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 2hydA
Description: No description for 2hydA was found.

Predicted Domain #2
Region A:
Residues: [81-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHRVESLTIT FHGREIVVDT KLELNRGRRY GLIGLNGSGK STIIQAIYNK EMPIPESVDM  60
   61 YLVSREMPAS EKTALQAVVD VDSVRKELEH LAEQLASQTD EESQDKLMDV YERLDEMDAS 120
  121 LAEKKAAEIL HGLGFTKTMQ MKKCKDFSGG WRMRIALARA LFLKPSVLLL DEPTNHLDLE 180
  181 ACVWLEEELA QYKRTLLVVS HSQDFMNGVC TNIIHLFQKQ LVYYGGNYDQ FVKTRLELLE 240
  241 NQQKRYNWEQ SQLQHMKDYV ARFGHGSAKL ARQAQSKEKT MAKMIAGGLA EKAVTETVKQ 300
  301 FYFFDAGEIP PPVIMVQHVS FRYNENTPWI YKDIDFGIDL DTRIALVGPN GAGKSTLLKL 360
  361 LCTDVMPTDG LIRRHSHCKI GRYHQHLHEE LPLDLSALEF MMKEFPDVKE KEEMRKIVGR 420
  421 YGITGREQVC PMKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 2iw3A
Description: No description for 2iw3A was found.

Predicted Domain #3
Region A:
Residues: [515-622]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDGQRCRVS FAWLAWQQPH LLLLDEPTNH LDMESIDALA EAINCFPGGM ILVSHDFRLV  60
   61 SQVAEEVWVC DNQGILKWDG DIFSFKEHLR KQIDKDVRSR EKGVVKER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 2nq2C
Description: No description for 2nq2C was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle