YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18906
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18906.

Description	E-value	Query Range	Subject Range
gi\|187023412, gi... - gi\|39582925\|emb\|CAE72990.1\| Hypothetical protein CBG20335 [Caenorhabditis briggsae], gi\|187023412\|em...	162.0	[0..1]	[299..1]
gi\|78066438, gi\|... - gi\|78066438\|ref\|YP_369207.1\| Alpha/beta hydrolase [Burkholderia sp. 383], gi\|77967183\|gb\|ABB08563.1\|...	157.0	[0..23]	[298..3]
gi\|148262651, gi... - gi\|88934660\|ref\|ZP_01140301.1\| hydrolase, alpha/beta fold family [Geobacter uraniumreducens Rf4], gi...	155.0	[0..32]	[298..5]
gi\|75705523, gi\|... - gi\|75812767\|ref\|YP_320384.1\| Alpha/beta hydrolase fold [Anabaena variabilis ATCC 29413], gi\|75705523...	155.0	[0..33]	[298..12]
PRXC_SYNY3 - Putative non-heme chloroperoxidase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=slr0... gi\|7433088 - pir\|\|S76992 probable bromide peroxidase (EC 1.11.1.-) - Synechocystis sp. (strain PCC 6803) PRXC_SYNY3 - Putative non-heme chloroperoxidase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0314 PE=3 S...	155.0	[0..33]	[298..12]
gi\|63258412, gi\|... - gi\|66047705\|ref\|YP_237546.1\| Alpha/beta hydrolase fold [Pseudomonas syringae pv. syringae B728a], gi...	154.0	[0..33]	[298..8]
gi\|89157925, gi\|... - gi\|89204352\|ref\|ZP_01182930.1\| Alpha/beta hydrolase fold [Bacillus weihenstephanensis KBAB4], gi\|891...	154.0	[0..30]	[298..3]
gi\|148253777, gi... - gi\|78693761\|ref\|ZP_00858275.1\| non-heme chloroperoxidase (chloride peroxidase) (CPO-F) (chloroperoxi...	154.0	[0..4]	[297..33]
gi\|83633852, gi\|... - gi\|83645809\|ref\|YP_434244.1\| alpha/beta superfamily hydrolase/acyltransferase [Hahella chejuensis KC...	154.0	[0..2]	[298..24]
gi\|23126418, gi\|... - gi\|23126418\|ref\|ZP_00108314.1\| COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrola...	154.0	[0..22]	[297..5]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSRNLAKT ISNSKNAKNI HTSCRKFAPV PMTYASYSSP ELDRNSPLVI VHGLFGQKQN  60
   61 WNSVGKALHK KLEAPVYAVD VRNHGSSPHT ETMSYTEMAE DLVLFIDKVK EETKKTRVNL 120
  121 LGHSMGGKIV MRLAIDSKWS DRIEKLIVED VSPKGYSRRH LEFRELIKTM RNVDLCRTRK 180
  181 EILKDLESAI PDLAMRQFIL TNLQPSSENE GQMEWKININ TIDSHVDEIL GYTLPVGSFR 240
  241 GPTLFLHGAN SGYVPDDHKP DIKCLFPQVQ FDAIPDSGHW VHAEKPQLFI NSVYKFLKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1va4A
Description:	Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.39629727416851	bayes_pls_golite062009
lipase activity	0.849473630399459	bayes_pls_golite062009
carboxylesterase activity	0.424330502936163	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.264183693934251	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: