YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE18904
Organism: Caenorhabditis elegans
Length: 786 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18904.

Description E-value Query
Range
Subject
Range
gi|68368751 - gi|68368751|ref|XP_684042.1| PREDICTED: similar to Aminopeptidase puromycin sensitive [Danio rerio]
593.0 [0..7] [785..254]

Back

Predicted Domain #1
Region A:
Residues: [1-786]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSFLFILL TFFKTTDLQV VTQETDDTNY RLPRNVFPTE YRLHITTFLP GYKWEADEKS  60
   61 FTFIGDVKIQ IEVKEETDTI VLHTDSLNIN NVLLHNACVC ANLKNLIQYF RLAITKFENR 120
  121 QQTNSKYSLY GKIGKIREDG EGYYRTISPG LNETTMYNAV TQFEPTAARF MVPCFDEPEF 180
  181 KAIWHVTVVH PTGSTALSNA KEIDNTKTND DFSTTEFEST LKMSSYILAI FVGDVQFKEA 240
  241 VTKNGVRIRV YSDPGHIDSV DHALNVSRIV LEGFEKQFGY PYEMDKLDLI AVYNFRYGAM 300
  301 ENWGLIVHQA YTLIENLMPG NTDIISEVVA HEIAHQWFGN LVTMKFWDQL WLNEGFATYM 360
  361 TAYGYTFLDP NYDRDYYYLS PQFESQSGNE LGPLNSMIKL SHGAIGNPSQ NYAKGCSFIR 420
  421 MLEKIVGTEH FNEAIRTYLH THDFSNVEDK NLYDALRVYS DKLEINGKPF DIEEFGRCWT 480
  481 HQTGYPTVYV SSYYAGQTRL SQVKVKEIVT GDFHECNNKW DIPIWYQQSG STEVELTWLE 540
  541 KDQDELEINT TGFAIINANS NGLYDVVYSE VLYEQVASEL KNNTQMYSAS TKARVLSDAI 600
  601 HYYYKGEVSL KNSLIIAQAL ANDTNQEIRS KAAMHLTHAI AKLNQDINEA SRILEGIQIE 660
  661 EVNDIDIFSK CGPFKEFPKC FFNAFNSYDH FCASMKLDLS KSSIDQIVWW LKFDQYKSML 720
  721 ISMLHCLNED SMQKVLHEFV DVSETPGPEN PHNKGKLSDS QGKTRAGNFF KFSDKSPFSE 780
  781 FLKMQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1z1wA
Description: Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle