YRC Public Data Repository - Protein Structure Prediction

Protein:	aip-1
Organism:	Caenorhabditis elegans
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aip-1.

Description	E-value	Query Range	Subject Range
gi\|40763986 - gi\|40763986\|gb\|AAR89635.1\| arsenite inducible RNA associated protein (aip-1) [Caenorhabditis elegans...	258.0	[0..1]	[202..28]
ZFN2B_MOUSE - AN1-type zinc finger protein 2B OS=Mus musculus GN=Zfand2b PE=1 SV=1	224.0	[0..3]	[179..2]
gi\|109101054 - gi\|109101054\|ref\|XP_001097710.1\| PREDICTED: similar to zinc finger, AN1-type domain 2B isoform 2 [Ma...	222.0	[0..3]	[179..2]
gi\|187030347, gi... - gi\|39590430\|emb\|CAE66169.1\| Hypothetical protein CBG11407 [Caenorhabditis briggsae], gi\|187030347\|em... gi\|157759824 - gi\|157759824\|ref\|XP_001672254.1\| Hypothetical protein CBG11407 [Caenorhabditis briggsae AF16]	221.0	[0..1]	[202..1]
ZFAND2B - zinc finger, AN1-type domain 2B	221.0	[0..3]	[179..2]
gi\|24581431, gi\|... - gi\|24581431\|ref\|NP_608778.1\| CG12795-PA [Drosophila melanogaster], gi\|22945274\|gb\|AAF51108.2\| CG1279...	220.0	[0..3]	[197..2]
ZFN2B_RAT - AN1-type zinc finger protein 2B OS=Rattus norvegicus GN=Zfand2b PE=1 SV=1	220.0	[0..3]	[177..2]
gi\|41389084, gi\|... - gi\|41389084\|gb\|AAH65896.1\| Zinc finger, AN1-type domain 2A [Danio rerio], gi\|41055871\|ref\|NP_956811....	219.0	[0..3]	[197..2]
gi\|76610615, gi\|... - gi\|76610619\|ref\|XP_584945.2\| PREDICTED: similar to CG12795-PA isoform 1 [Bos taurus], gi\|76610615\|re...	217.0	[0..3]	[178..2]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEFPNLGKH CESTVCNRLD FLPIKCSGCG HFYCSEHFTF EAHNCPTGSR ISVQVPICPI  60
   61 CEKPVPTPKD VNVDQQVNEH IQNNCQTPKR AKVYSNACTV PK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.09691
Match:	1wysA
Description:	Solution structure of the first zf-AN1 domain of mouse RIKEN cDNA 2310008M20 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [103-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CKKKELVAMN CSKCRNNYCL SHRHERDHSC ERKVGEMKIN QKKSWTDSIT SIARSRMNPC  60
   61 SAQARTEGDE ALARSLQQEE YNRVAPPHQT RNSNSNCTVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1wfeA
Description:	Solution structure of the 2nd zf-AN1 domain of mouse RIKEN cDNA 2310008M20 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits