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View Structure Prediction Details

Protein: lact-6
Organism: Caenorhabditis elegans
Length: 430 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lact-6.

Description E-value Query
Range
Subject
Range
lact-2 - esterase status:Confirmed UniProt:Q09621 protein_id:CAA88435.1
265.0 [0..6] [429..33]

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Predicted Domain #1
Region A:
Residues: [1-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDFDTFGC LYLFVIPFVV QPFLSCWLTP NVNDDNVNGY VDERFETVLE AFRRNFGQGE  60
   61 EREGAAFAVY YKGKEVVNLW GGYADKESGR KWSENTKSVM FSASKAVCSI VIAVMVDRGL 120
  121 LNYADRVVDY WPEYGRYGKN ATTIEDVLSH KAGLPYLSED ISIEDVKNGL KIMEKVENSV 180
  181 PAWTPGTASG YHAVTFGFIL DGLVRKADPR GRNIKRFFEE EIARPNDLDI QIGAQKSEAP 240
  241 YLARLTTPSL WEFTRDIIKD PKILIMLGLM YIRFDTLVHK MRSNPDWLLV NYDTMVLNDP 300
  301 EIVSLNLPAV TAIGNVRDVS RLLSMIVEKE LISNTTLLEL SRPTLNSWHF EKVTIWPVIK 360
  361 GHGFFYEKHP LIPEAFTFGH PGYGGQFVHM DPESQISITY LSNGLKTGTG ELCGTYMRLL 420
  421 NEVYNSLRRI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.522879
Match: 1y54A
Description: Crystal structure of the native class C beta-lactamase from Enterobacter cloacae 908R complexed with BRL42715
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle