YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18275
Organism:	Caenorhabditis elegans
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18275.

Description	E-value	Query Range	Subject Range
gi\|50732495 - gi\|50732495\|ref\|XP_418662.1\| PREDICTED: similar to MGC68843 protein [Gallus gallus]	153.0	[0..18]	[182..166]
gi\|114656425 - gi\|114656425\|ref\|XP_510316.2\| PREDICTED: hepatocyte growth factor activator inhibitor 1 [Pan troglod...	150.0	[0..6]	[182..386]
SPIT1_MOUSE - Kunitz-type protease inhibitor 1 OS=Mus musculus GN=Spint1 PE=1 SV=2	145.0	[0..6]	[182..227]
gi\|74000135 - gi\|74000135\|ref\|XP_544625.2\| PREDICTED: similar to hepatocyte growth factor activator inhibitor 1 is...	145.0	[0..6]	[182..276]
gi\|67514572, gi\|... - gi\|67514572\|ref\|NP_001004265.2\| serine peptidase inhibitor, Kunitz type 1 [Rattus norvegicus], gi\|66...	144.0	[0..6]	[182..227]
gi\|86820186, gi\|... - gi\|86820186\|gb\|AAI05311.1\| Serine peptidase inhibitor, Kunitz type 1 [Bos taurus], gi\|114052192\|ref\|...	144.0	[0..9]	[182..230]
gi\|32880107, gi\|... - gi\|61369192\|gb\|AAX43298.1\| serine protease inhibitor Kunitz type 1 [synthetic construct], gi\|3288010...	142.0	[0..6]	[182..233]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAITISTI FITFCFAQQQ TDCFSARDTG NSGCGQQGAR SFYFHKNTRT CQPFFYQGCD  60
   61 GNSNRFQSKE ACESACRNAT ASDDLAYAVC PSGAYPAGAT SGQTVGCSNC PHGYECQNQQ 120
  121 CCPTKEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [128-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCSLQYDAGK FGSSGKHTPR YFFSKSYKNC MLFTFYGRDG NANNFATYNE CKNFCM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.43
Match:	1y62A
Description:	A 2.4 crystal structure of conkunitzin-S1, a novel Kunitz-fold cone snail neurotoxin.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits