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View Structure Prediction Details

Protein: CE18262
Organism: Caenorhabditis elegans
Length: 462 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18262.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
290.0 [0..19] [460..577]

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Predicted Domain #1
Region A:
Residues: [1-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVEEQQTN QKRFTFADKT RFIVLIIGLC CICCTNANYN AINFSVICMQ DVISEQSVVN  60
   61 QTHWLENTAD VSFIFSAGAA GAIIGLFPSV PLTTKFGVRN VLSFYGLLTA VSTLLIPLAV 120
  121 SIGYYPVIII RMFQGFGASI LFSAIGSISE GWSPIAEIST YVAFLSAGFQ ISSIILMPVS 180
  181 GVLCESQLGW RYIFYLFGGI SVIAHIIFFT FFRDSATVHR NVSGKELRKI STGRLPTAGR 240
  241 QTVPYLDICK DKVVLSIWAA AIGGNMSFMA LITYGPTYLN KVLGLDARET GFLNAIPYML 300
  301 ATAVKFVAGP LSDHMTFIPE TWRMIFFAAL SQLGLAIGFF VMALTNSKLI AQIAYTAAIV 360
  361 LAGINIVGVV KCAQMVARQH VHFVMAVISL SAWGAIFLLP IIIGFVCPNH TASEWAVFYT 420
  421 AVGIWVIIMN VPFPFFATMD AAEYTKPEWE QKKNTVAPEQ RI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle