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View Structure Prediction Details

Protein: npp-19
Organism: Caenorhabditis elegans
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-19.

Description E-value Query
Range
Subject
Range
npp-19 - status:Partially_confirmed UniProt:Q09601 protein_id:CAA86775.1
200.0 [0..1] [381..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSHLNQNTS GRHNSMDLNN SSISNFGTPV EQSTPALLFG KRKATVPSSY TASPLNTASA  60
   61 PCSDIFAVSA PAVPQHLKDT PGSKSVHWSP SLVQSGEKSA AQTQNTPANL SFGGNSSFSA 120
  121 PTKPAPQSIQ TSSFGGQAMH APPLRSLRDK VEPAKKIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNTFTARST PLSTPITQRV TSRLAEAEEQ PMEEEADAAD TWVTVFGFQP SQVSILLNLF  60
   61 SRHGEVVSHQ TPSKGNFIHM RYSCVTHAQQ AISRNGTLLD QDTFIGVVQC TNKDVINGSA 120
  121 SGIVARSSNI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1wwhA
Description: Crystal structure of the MPPN domain of mouse Nup35
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [289-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAANRSASM YNSFVENDMA DQSVNHNENS VLNSSNVFDA NNSLNSSRIS VRSGVGMRPL  60
   61 AADQRTNILQ GTPSVRKAPD GLLNKFWNTI GLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle