YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: imb-2
Organism: Caenorhabditis elegans
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for imb-2.

Description E-value Query
Range
Subject
Range
gi|109123651 - gi|109123651|ref|XP_001109480.1| PREDICTED: similar to transportin 2 (importin 3, karyopherin beta 2...
326.0 [0..5] [419..682]

Back

Predicted Domain #1
Region A:
Residues: [1-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQPDQHEL EQLLRCSLDG NKKVQEAACS AFATLEEEAG EQLIPFLGEI LDQLVKAFQC  60
   61 YQAKNLLILY DAIGTLANSV GDALSHPVYV QMLMPPLMEK WERLSDEDKE LFPLLECISA 120
  121 IVSAMGQSFL PYIQPVFTRC CSLIEKCVQQ NQQHIMAPDQ VEAPETDFII VALDLLSGLA 180
  181 ESLPEHMDPL VANSKLVELM LFCSLDVTPD VRQSCFALLG DLTKACPERV LPQSSNFIFF 240
  241 LAQNLDPSKI SVCNNAIWAL GELALKMGPA MKQFIGPIIE PLIVVINSQQ NMQRTLLENT 300
  301 AITIGRLGQC CGEELAPHIS RFVRPCCYSL RNIKDNAEKE SAFIGLCNMI NMNPVGVLND 360
  361 FIFWCDAIAS WTVPTDSLRV LFAGILQSFK QQVGDFNWNN FILQLPPPLR ERLSAFYQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 2ot8A
Description: No description for 2ot8A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle