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View Structure Prediction Details

Protein: CE18084
Organism: Caenorhabditis elegans
Length: 792 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18084.

Description E-value Query
Range
Subject
Range
CE35897 - status:Partially_confirmed UniProt:Q7JMN1 protein_id:CAE48508.1
693.0 [0..1] [792..1]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSSQVYPC SPKRVKIGAR QSKRHCRNLP SELQRAKRTK AVSKVSEHTM KRSSSMLDIN  60
   61 EDSQHSTNKA PPPKKAPEDR FDSANMNGSH VTLVENLPVE KVSSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 1cs0B
Description: Carbamoyl phosphate synthetase, small subunit N-terminal domain; Carbamoyl phosphate synthetase, small subunit C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [106-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERIAILDFGA QYGKVIDRRV RELLVQSEMF PLNTTARTLI ELGGFKGIII SGGPNSVFEP  60
   61 EAPSIDPEIF TCGLPVLGIC YGFQLMNKLN GGTVTREHIR EDGACEIQVD TSVHLFNGLH 120
  121 KTETVLLTHG DSVSEATVAP DFKVMAKSGH HVAGICNENR KLYGVQFHPE VDLTTNGTKM 180
  181 FENFLFKVVG CCGNFTIQNR EQSCISEINS IVGDKKVLVM VSGGVDSAVC AALLRRALGP 240
  241 NRVTAIHIDN GFMRHEESDA VEKSLAALDL PIHRYNFGTT FRSSTEHCKD GEVALDECDD 300
  301 PEMKRKIIGN TFIRVKDVIM KDLNINHDEY FLAQGTLRPD LIESASALAS GHADTIKTHH 360
  361 NDTFLVRELR KLGKVVEPLK DFHKDEVREL GKDLGLPESI VQRHPFPGPG LAIRILCASD 420
  421 KRPELMFNGP MYNGDVQGRI IDVTEQFLNS AINPSQGIYE HLQFEQARNN VLLSLSERDR 480
  481 QLAEQQTFQI SAHILPIKTV GVQGDARSYS YAVALSTEQR PIPWKLLFAY ASVIPKLFHG 540
  541 VNRVVYAFGS KIEFSIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 136.0
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [663-792]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTRTYLVPH IVTKLQMADH IANNILFGRV AASDGTQLPN VGHKIQQMPV VLLPVDFDRD  60
   61 RDMIGSYRHS IVLRPFVTSD FMTGQAAIPG VHLPEETLIE MDKAIRTNVL GISRVLLDMT 120
  121 CKPPGTTEWE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.12
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle