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View Structure Prediction Details

Protein: CE17799
Organism: Caenorhabditis elegans
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17799.

Description E-value Query
Range
Subject
Range
gi|187038294, gi... - gi|39588555|emb|CAE58078.1| Hypothetical protein CBG01159 [Caenorhabditis briggsae], gi|187038294|em...
gi|157761351 - gi|157761351|ref|XP_001673018.1| Hypothetical protein CBG01159 [Caenorhabditis briggsae AF16]
468.0 [0..43] [321..1]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYQNLPVIN ALHCYAREKV ECLEKFTKRV NTIDSFGTSF LVMSSSSQNI KCGWNGCGDK  60
   61 FSSELDMNMH VMMNHLMILE YGEFVMNRRA VNRKRARELA REESMEITSE SLHNPNALRA 120
  121 VKREPVLEVR EVEVPT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.48
Match: 1zw8A
Description: Solution structure of a ZAP1 zinc-responsive domain provides insights into metalloregulatory transcriptional repression in Saccharomyces cerevisiae
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [137-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNVAPVPARL PDFCPPARVP EHLQLNGFED QQRDHESLQI KANIMPVSMP STADGPLNRF  60
   61 SPDLVENDAG SDSSLQNGND QAQFDAQEYQ NQTAVTPLKL IEIIDEFLDR LKPMKQLGFV 120
  121 RPHKPVYCIV CLKYQKSFHT CNWKHTPGED RVAEMWYRRF GKERPNGKTQ LMKELCDIRQ 180
  181 WIIQEGGLGT FQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle