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View Structure Prediction Details

Protein: dph-1
Organism: Caenorhabditis elegans
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dph-1.

Description E-value Query
Range
Subject
Range
gi|157775049 - gi|157775049|ref|XP_001665590.1| hypothetical protein CBG09207 [Caenorhabditis briggsae AF16]
gi|187032034, gi... - gi|39580328|emb|CAE64483.1| Hypothetical protein CBG09207 [Caenorhabditis briggsae], gi|187032034|em...
547.0 [0..1] [396..1]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRATQIST LVEEIANNPN LKEDLKILPS NYTFEVPKTI WKIRSTESKY VALQFPEGLI  60
   61 MYACVIADIL EKYTGCDTVI MGDVTYGACC VDDYTAKSMG CDLLVHYGHS CLVPIQNTDG 120
  121 IAMLYVFVNI HINLSHLIDC VKENFQGKRL VVVSTVQFIP SLQTLRTTFN KDDSSIRIDI 180
  181 PQCKPLSPGE VLGCTSPRLD AS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYDAIVYLGD GRFHLESIMI HNPEIEAFQY DPYSRKLTRE FYDHDLMRKN RIGSIEIARK  60
   61 CTTFGLIQGT LGRQGNLKVV EELEAQLERK GKKFLRVLLS EIFPEKLAMF PEVDCWVQVA 120
  121 CPRLSIDWGT QFPKPLLYPF ELAVALDNIS VPSDHWPMDY YSNDSLGPWT NNNEANRPKR 180
  181 EKRKPHIVVR TEAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle