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View Structure Prediction Details

Protein: CE17066
Organism: Caenorhabditis elegans
Length: 572 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17066.

Description E-value Query
Range
Subject
Range
gi|114670980 - gi|114670980|ref|XP_001164327.1| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...
294.0 [0..4] [444..31]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLNSYSIC DFNFQLTFVA FTASWCPFSR KLMSSFSQAA ADYQAKYPDR KTVWGNVDCM  60
   61 AEDYLMNKYS ITKFPTMKVF FYGYMMTEYR GSRQVKGLIE YIEKMENTSS LVNLNEAESL 120
  121 TQWQNYVIPQ KGTLILWFPR GSPPFELILK AIALIHSQLV VVVPISENLL KHEDHQLWFS 180
  181 LDGEHVERFE GSVSNFKEIV EWIKKKSAGM VRELTFENME EMVEDGKPLL ILLRKKDDIE 240
  241 TEKQFVTTIR RELDQDTLLK LAPVMADGKV LTAVLRHFNK GLDDLPFLLI DQFTHSFPSP 300
  301 WKGNEIFAEG NIKQVCMRKD YVFKNQEESR KSKIVEFWHC IIVLEIHNLN IFQFVADLFN 360
  361 DNHHRKLHEK LNELIQKIVT ETEEIEKQAS EEKVEKPTEK LEKHESVGWL IAQSEQTSGC 420
  421 PESFCLVDVN DNDVYHKSHI ANAYH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [446-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDRIMLSRLV YETPILAQAR AEGHLLVIYG REAERVAKVL FQRGFKTVLL KGNTAQFKEQ  60
   61 YPCLLEPSID FVKLKEIYEK KKNSVFGGRL WRSTSASRIK SVTRDERAEK SKKVNSRPTS 120
  121 QSRKPWL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle