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View Structure Prediction Details

Protein: CE17034
Organism: Caenorhabditis elegans
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17034.

Description E-value Query
Range
Subject
Range
gi|157756095 - gi|157756095|ref|XP_001670391.1| Hypothetical protein CBG05940 [Caenorhabditis briggsae AF16]
gi|39593650, gi|... - gi|39593650|emb|CAE61942.1| Hypothetical protein CBG05940 [Caenorhabditis briggsae], gi|187034595|em...
278.0 [0..1] [360..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAPAKEED FSWAYTEEPH ASRRKEILAK YPQIKELFGQ DKAFRPVVVC MVIAQIVFAY  60
   61 LLRDSDWLLI LFQAYFVSGT INHSLTLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHEISHNQAF GTNRPLANRI FGFIANLPMC IPMSISFKKY HLEHHRNLGE DVIDTDVPTE  60
   61 FEAKVFRTWL GKMIWMSLQP LFYGIRPFML YPKSMTDLEL INVAIQLLFS TFIYTQFGAK 120
  121 SFFFLFGGLV LGMGLHPCAG HFVSEHYVFK KDQETYSYYG PINMVVFNVG YHVEHHDFPY 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITGSNLPKVR EIAPEYYQDW QTHDSWVGMM ADFIFNPKMT LRKRIKRKYA KPDQFSFYGT  60
   61 GPYETSHVYQ SIANVVNMLT GFGGRKSVVK CD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle