YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16966
Organism:	Caenorhabditis elegans
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16966.

Description	E-value	Query Range	Subject Range
gi\|187037976, gi... - gi\|39587638\|emb\|CAE58576.1\| Hypothetical protein CBG01742 [Caenorhabditis briggsae], gi\|187037976\|em... gi\|157757697 - gi\|157757697\|ref\|XP_001671192.1\| Hypothetical protein CBG01742 [Caenorhabditis briggsae AF16] CRE10251 - RP19926 WBGene00062801 status:Confirmed	218.0	[0..1]	[181..1]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	216.0	[0..1]	[171..51]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	215.0	[0..1]	[171..1]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	214.0	[0..1]	[171..1]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	213.0	[0..1]	[171..1]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	213.0	[0..1]	[171..1]
gi\|76659462 - gi\|76659462\|ref\|XP_873411.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	209.0	[0..1]	[171..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYTREPCP YRIGDDIGSA FAMGLVGGSI FQAFGGYKNA AKGKKLVGMM REVRMRSTLT  60
   61 GVQFAAWGGM FSTIDCCLVA IRKKEDPINS IVSGGLTGAL LAIRSGPKVM AGSAILGSVI 120
  121 LAMIEGVGLV TTRWMGAMMD PTQPPPEALD DPRSLGQKSQ AEPGLDQTRP FGIPTGLPNL 180
  181 S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.886057
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits