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View Structure Prediction Details

Protein: CE16823
Organism: Caenorhabditis elegans
Length: 658 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16823.

Description E-value Query
Range
Subject
Range
CE16853 - status:Partially_confirmed UniProt:O45155 protein_id:AAC04399.1
682.0 [0..5] [658..157]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTDWYVFHS VNSFESMLQI YWKFELVDSP EMYINEVAIT MDVVYKIIDN KGKAEICYLQ  60
   61 NCSNIPEDDE LMILNPNIKT FFIGIKMSKR EDFTDTYWFD TSKM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.22
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #2
Region A:
Residues: [105-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFSVKVSSK KRLVTHLYKE TGDIIHLAPR VSDEYDHGLQ FVVGQNHFVM GEHYNKVTFK  60
   61 PWSVKNFAME KEFPSGIGYL QKIIPDQDAW VLTAWIFRAM VGLQFEKPEF EKFFIGVKML 120
  121 NNMTTNHTNL PKIDNMGSFN ASGHWKLLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [254-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYEEFDTQTQ PIQLIPESGK NYIKFTYDVI NNVYSHNNVD GSDVSPRKLQ YIERIVHEGN  60
   61 NEAFIQPDYP EEVNGGHIDW MFQLKNDGKS VKKVVIKMAG IDDILKENAG TIEACSNYHI 120
  121 NCTNIPTNK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.585027
Match: PF04721.8
Description: No description for PF04721.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [383-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLIMEYPVDM LYISVVLSDN IRLFKTDVND RKSVETFSIE VFWQNTTET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [432-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLATTAVSEM TTTPGTIETT SPSTLNDTES NQDVVSTPLL TWREEHIALG PMSKENHVKF  60
   61 TYDVTSDTYS HTKPNGSSYV PYNVGNIERV VDKRLNQVYL HRNDSTKYTY ISWAFDTTID 120
  121 GKVVDKLTIK VSGMEECAWG GTLEICRIYG YEKCTVIPIN EGLTIEYPQL SVFKIGYYYS 180
  181 TLSDPKNNPD TILFKTELKE GLSVESLSVE VNWKPKGPLT NQTTLPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 2g9gA
Description: No description for 2g9gA was found.

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