YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE15903
Organism: Caenorhabditis elegans
Length: 490 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15903.

Description E-value Query
Range
Subject
Range
gi|55733197 - gi|55733197|emb|CAH93282.1| hypothetical protein [Pongo abelii]
gi|197102626 - gi|197102626|ref|NP_001126931.1| protein tyrosine phosphatase, receptor type, M [Pongo abelii]
359.0 [0..23] [486..504]

Back

Predicted Domain #1
Region A:
Residues: [1-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDCNWTNPL CNTSLLLASG YALWSCASKK NKKETKTETK KSHDCPPQTI EPVKDEKNSN  60
   61 SEEKKTTSSN NEVPPQKKLI GNDEVKKEKK KSEDDLLDVK KTASKEDDKK RMDKKDPSKK 120
  121 LSKEKLREEK KEQSKKVNKE KKMNKSESVD EDNEQPPEPG SDPRKIWAFK AAKMKCQAIS 180
  181 KLHQDKIKGY MPPNCTYTAY DANPDLNRYA DVRCIEETRV VLKNHDRDYI HASWMRMPGK 240
  241 DQSTYITTQG PLPETLSDFW HMIYQEKIAY VLMLCTLFEG GVEKCALYYP EKLGEVVKFG 300
  301 KYEITLTECK EEAIAGTIWN ALTVTNTEDA SSEPLYMNHV QVPWWPDQLA PEDARPMIEL 360
  361 YKWVKKVNPK ETPICVHCSA GVGRTATFVG IDYATIRIME NPNIEMLDIV REMRAMRFQA 420
  421 VQSHMQFLFL YVVLMEYFIG EGVVERTGRV DTFMTQYKKH AQKKLAKRAA QNQQGEKLAA 480
  481 EEKEKDKVKV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.39794
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle