YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: cth-1
Organism: Caenorhabditis elegans
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cth-1.

Description E-value Query
Range
Subject
Range
gi|75910353, gi|... - gi|75910353|ref|YP_324649.1| cystathionine gamma-lyase [Anabaena variabilis ATCC 29413], gi|75704078...
409.0 [0..5] [386..1]

Back

Predicted Domain #1
Region A:
Residues: [1-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFPHFGTD AVHVGQEPEQ WDINQVVPPI SMSTTYKQDN PGEPKRYDYA RGGNPTRDVL  60
   61 QKNLAALEGA KHCQAFSSGL AASSAVINLL NHGDHIVCSD DVYGGTIRYI RQIAVKKYGM 120
  121 EVDSVDLTDV QNLEKAIKPN TKMVWFESPS NPLLKVVDIA AVVQTAKRAN PEIVVVVDNT 180
  181 FMTPYFQRPL SLGADIAVHS ITKYINGHSD IIMGAAITNN DEFQQHLHFM QRAIGGVPSP 240
  241 FDCFLVNRGL KTLHVRMKAH FENALAIAKF LEAHDCIESV LYPALPSHPQ HTVHVKQTKG 300
  301 MSGMISFYLK GELCQSRAFL SALKVFTLAE SLGGCESLAE LPSIMTHASV PSATRAELGI 360
  361 TDNLIRISVG IEDLDDLIAD LDQALKIAIP NV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 2nmpA
Description: No description for 2nmpA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle