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View Structure Prediction Details

Protein: CE15634
Organism: Caenorhabditis elegans
Length: 120 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15634.

Description E-value Query
Range
Subject
Range
CE36514 - WBGene00013372 status:Predicted TR:O45968 protein_id:CAA16429.2
136.0 [0..3] [100..1]
gi|39597846, gi|... - gi|39597846|emb|CAE68538.1| Hypothetical protein CBG14365 [Caenorhabditis briggsae], gi|187027851|em...
gi|157769391 - gi|157769391|ref|XP_001676516.1| Hypothetical protein CBG14365 [Caenorhabditis briggsae AF16]
112.0 [0..8] [101..2]
VMO1 - vitelline membrane outer layer 1 homolog (chicken)
103.0 [0..16] [117..17]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMNTSWLFL AITISVLPLI QCRHVLYLGS PRVNNQGTWK AWQICHDGWF VHGMQLKYEA  60
   61 TGGDLTGMNA VALYCQRIGL VSTKTILALV ENEMMVRLWA LDCTIWSKPF TFVGMDYEDY 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle