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View Structure Prediction Details

Protein: CE15552
Organism: Caenorhabditis elegans
Length: 523 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15552.

Description E-value Query
Range
Subject
Range
gi|187024563, gi... - gi|39594646|emb|CAE72224.1| Hypothetical protein CBG19336 [Caenorhabditis briggsae], gi|187024563|em...
gi|157764684 - gi|157764684|ref|XP_001674685.1| Hypothetical protein CBG19336 [Caenorhabditis briggsae AF16]
333.0 [0..1] [523..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILLQYAP NWTEHATWLV IVAFIFAFFV SYGMGANDSC NDWGPAVGAG TVTLPQAYFL  60
   61 SGILNVAGAV LLGYKVIETL RTGIIEFDIF DVYAQYNETT HQYDTVDHCG NATLIGGWKA 120
  121 PDILPGAEPL ECAKYTSIDF MLTQTASLAG VAAFMILSSC FKIPVSATHA IVGASVATSF 180
  181 YIRGNVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [188-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKWGEIINIV VSWFISPIIA GTIAATMYYI IKYSVLIRQD TFKWALRLCP IFMCFTLVVN  60
   61 LYACIYDGSK YLGLDRLDAI EAFLISVAIG VTGWAILTFP LRNWLPNRAH RLYDKETV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [306-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMQRRMEAGK ATKSHKIKDM REPDVADNIK ELPWYKYLWA YVPEDRLTKK VFNTLQIISS  60
   61 SMLSFTHGAN DTGNTIAPLL AIWLCYESGY AFGNAETRDD TQMLLAYGSL AMIVGFVTLG 120
  121 HRTIKLLAHE MTVDMSPISG FCIEVGTAFT VLICVKFGIP ISSTHCTVGA VVFVGMAKST 180
  181 SEGVSFGTFR KICFFWLLCF PMSAIIGIGA TIILQQFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle