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View Structure Prediction Details

Protein: lin-15A
Organism: Caenorhabditis elegans
Length: 719 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-15A.

Description E-value Query
Range
Subject
Range
gi|473225 - gi|473225|emb|CAA82855.1| lin-15A [Caenorhabditis elegans]
1255.0 [0..1] [686..1]

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Predicted Domain #1
Region A:
Residues: [1-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAPAAPAKD VVSADEKEEI IAKRKFRMKN VDAMRMSSLA NDRMAFNKKC NALAMKFVKS  60
   61 AGIGTDALQL TCFQELVRHF NPIAAVVVGV KREPNSNVQA EKKTIPKVKT IQTPTQSMES 120
  121 VRLLQEKKAS ATEEQSAESA SIMKHFANTI PNSTPTQSVK DVLTAAASKG QFKSSAEIFS 180
  181 HFPSEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [187-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSKPRATRE GSQPSDYTYC TYLTPCILCE KALLMRESIA MTDNEAVKVL MAAVMSGHFR  60
   61 MATAEKAIRH ERLRMCYDHV DFVYEMMCDA FEAKTESEIN EMPPDRLMRG HDIYRALKRV 120
  121 GDLHKGKVTS NTPLYSFKNS IKSYYRNHVP RMVNGSLSKP SPKPFSELVA LLQSVPPSTN 180
  181 LNELLNHNLS LSDADKQELI QLINGKDNRF TSRRRKIEDI LDNKFAAAAA KAYRDHSEDA 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [427-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSEPYIPNQS EMQNTVERRK RKLHSPEQDD AGSSSISWNA KKTKTPIDYV HLATRVLEGH  60
   61 SIADEALLHK SKVSYARNAF GEKPSSPTPP SAPLKFCVVN GKKYLRFENG TGPPKVVVQG 120
  121 NVVLRTNTLK DALTTAPRAQ NQPSTSTDSS SSSEMEGIRQ SFGAPQKEEE EEELVPTLLQ 180
  181 NKPTHVESSS PVEKKPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [624-719]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKTNVEKPAV RLGRMLTTAF GSMSYRTRKS VENKTDLLNQ PTSASPRRMI KVVRNRNPHL  60
   61 AKQVAAAPSE PKHIPPTHME KKPEELLMDP KPEPIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle