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View Structure Prediction Details

Protein: CE15349
Organism: Caenorhabditis elegans
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15349.

Description E-value Query
Range
Subject
Range
PTPRS - protein tyrosine phosphatase, receptor type, S
352.0 [0..2] [343..1336]

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Predicted Domain #1
Region A:
Residues: [1-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVIQKRRT KKSTQKSKEV SQRTVDEGTT AEKKTHRKQI VKFVKNALEK GPAGLRAEFA  60
   61 AMKRFNDFEK MKAFKEAQEH GKNRYKDVGC LDHNRVKLHP PWPHDYIHAN FVSTPSNPRR 120
  121 FICTQAPLDK SCADFWYMCL QEKVDSIFML CNIMEKGAKK CCDYFACKDK PVLEFEEKGH 180
  181 KIIVKFESTG KMKFEKNTDA KITETVFTVE GPGGLAQKVT QYHWIDWPDR GVPTADMAIV 240
  241 ELLAKTRPSK GPTVVHCSAG IGRTGSVVMI EYILDQLLGG QQIEETDKIL QKIREQRNNS 300
  301 IQTDQQYLFV HQVILNYCLD KKMFDVDVKL AHLAFTEKYM KSVH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.154902
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle