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View Structure Prediction Details

Protein: CE15140
Organism: Caenorhabditis elegans
Length: 155 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15140.

Description E-value Query
Range
Subject
Range
gi|115482122, gi... - gi|37534574|ref|NP_921589.1| putative speckle-type protein [Oryza sativa (japonica cultivar-group)],...
143.0 [0..5] [142..196]
TDPZ4_MOUSE - TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=1
142.0 [0..7] [131..192]
gi|4680341 - gi|4680341|gb|AAD27632.1|AF128457_6 hypothetical protein [Oryza sativa subsp. indica]
140.0 [0..5] [142..549]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIIKLDVG GTIFKTSKDT LTKFHSFFKT MLECKTGPKI EKTGCIFIDR SPKHFELILN  60
   61 LMRDGDLPLP EDERELRELM AEAQFYWLDG LVLMCCDKLN STKKVQIDQR ANTKKYDLSW 120
  121 FFVFSIIFLV LVFVYYMPAL KGYFIVEKRN KCYLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle