YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ret-1
Organism: Caenorhabditis elegans
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ret-1.

Description E-value Query
Range
Subject
Range
gi|56791762, gi|... - gi|56961618|ref|NP_989697.2| reticulon 4 [Gallus gallus], gi|56791762|gb|AAW30397.1| NOGO isoform A2...
258.0 [0..2] [212..852]
gi|109103031 - gi|109103031|ref|XP_001112090.1| PREDICTED: reticulon 4 [Macaca mulatta]
258.0 [0..5] [212..1126]
gi|40788974 - gi|40788974|dbj|BAA74909.2| KIAA0886 protein [Homo sapiens]
257.0 [0..5] [212..1023]
gi|49333549, gi|... - gi|72535156|ref|NP_001025138.2| reticulon 1a isoform 1 [Danio rerio], gi|49333549|gb|AAT64113.1| ret...
254.0 [0..23] [212..628]
RTN4_MOUSE - Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
253.0 [0..19] [212..967]

Back

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTRFVNKK YSKQPTWVPA TDFPGKILDV IYWRDAKKSA IVLSLALLVL FVLAKYPLLT  60
   61 VVTYSLLLAL GAAAGFRVFK KVEAQIKKTD SEHPFSEILA QDLTLPQEKV HAQADVFVEH 120
  121 ATCIANKLKK LVFVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #2
Region A:
Residues: [136-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLESIKFGL VLWSLTYIAS WFSGFTLAIL GLLGVFSVPK VYESNQEAID PHLATISGHL  60
   61 KNVQNIIDEK LPFLRSAPVA AEEKKDQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle